Virtual EmbryoVirtual Embryo
Stages/TS13/Spatial/imputed_e8_25

Imputed · E8.25

Spateo Stereo-seq · mouse · stage TS13 · 15,935 cells · 169 genes

Imputed — not measured

Cells from a single-cell atlas were placed into the eMouseAtlas anatomical mesh for TS13 by canonical organ mapping. The cell-type-to-organ assignment is what was imputed; position within an organ is random, so organ-level structure is meaningful and sub-organ texture is not.

Expression from
Imputed — eMouseAtlas mesh + TOME scRNA-seq
Anatomy from
Not identified
These cells do not match the proportions of any delineated specimen at TS13 in this atlas, so the mesh they were placed in is not one we hold — or was a different version of one. Recorded as unknown rather than guessed.
Delineated at this stage, for reference
EMA24

Dated E8.25 by the source data, which assigns it to TS13. Cards are placed by Theiler stage, so this can sit under a stage page whose representative day differs.

Coordinates are in the stage mesh's own units and are not comparable across Theiler stages — TS19 measures about five times TS20 despite being the earlier stage.

Dataset
Species
mouse
Organ / tissue
whole embryo
Technology
imputed
Timepoint
E8.25
Viewing stage
TS13
Cells
15,935
Genes
169
Default colour
cell_type
Spatial key
spatial
Source
Imputed — eMouseAtlas mesh + TOME scRNA-seq
Stage-matched EMA samples (TS13)

Anatomical references at the same Theiler stage. Not spatially registered to this dataset — provided as a cross-reference.