Stages/TS18/Spatial/imputed_e11_25

Imputed · E11.25

Spateo Stereo-seq · mouse · stage TS18 · 222,125 cells · 39 genes

Imputed — not measured

Cells from a single-cell atlas were placed into the eMouseAtlas anatomical mesh for TS18 by canonical organ mapping. The cell-type-to-organ assignment is what was imputed; position within an organ is random, so organ-level structure is meaningful and sub-organ texture is not.

Expression from

omg_whole

Qiu et al., Nature 2024 (OMG)

Anatomy from

Not identified

These cells do not match the proportions of any delineated specimen at TS18 in this atlas, so the mesh they were placed in is not one we hold — or was a different version of one. Recorded as unknown rather than guessed.

Delineated at this stage, for reference

EMA54

Dated E11.25 by the source data, which assigns it to TS18. Cards are placed by Theiler stage, so this can sit under a stage page whose representative day differs.

Coordinates are in the stage mesh's own units and are not comparable across Theiler stages — TS19 measures about five times TS20 despite being the earlier stage.

Dataset

Species: mouse
Organ / tissue: whole embryo
Technology: imputed
Timepoint: E11.25
Viewing stage: TS18
Cells: 222,125
Genes: 39
Default colour: cell_type
Spatial key: spatial

Source

Imputed — eMouseAtlas mesh + Qiu et al. 2024 (OMG) scRNA-seq

Stage-matched EMA samples (TS18)

Anatomical references at the same Theiler stage. Not spatially registered to this dataset — provided as a cross-reference.