Stages/TS15/Spatial/imputed_e9_5

Imputed · E9.5

Spateo Stereo-seq · mouse · stage TS15 · 336,999 cells · 169 genes

Imputed — not measured

Cells from a single-cell atlas were placed into the eMouseAtlas anatomical mesh for TS15 by canonical organ mapping. The cell-type-to-organ assignment is what was imputed; position within an organ is random, so organ-level structure is meaningful and sub-organ texture is not.

Expression from

omg_whole

Qiu et al., Nature 2024 (OMG)

Anatomy from

EMA36

Identified by bounding-box proportions, which match to 1.0%. The mesh sets the frame; it is not a registration of these cells to that specimen.

Dated E9.5 by the source data, which assigns it to TS15. Cards are placed by Theiler stage, so this can sit under a stage page whose representative day differs.

Coordinates are in the stage mesh's own units and are not comparable across Theiler stages — TS19 measures about five times TS20 despite being the earlier stage.

Dataset

Species: mouse
Organ / tissue: whole embryo
Technology: imputed
Timepoint: E9.5
Viewing stage: TS15
Cells: 336,999
Genes: 169
Default colour: cell_type
Spatial key: spatial

Source

Imputed — eMouseAtlas mesh + Qiu et al. 2024 (OMG) scRNA-seq

Stage-matched EMA samples (TS15)

Anatomical references at the same Theiler stage. Not spatially registered to this dataset — provided as a cross-reference.